add_stats: Add stats to plot activities per cluster

In hesselberthlab/scrunchy: Single Cell Reconstruction of Functional Heterogeneity

Description

Adds stat comparison bars to a beeswarm plot of activity across specified groups

Usage

add_stats(p, df, val = q.value, y_loc = y_loc, xmin = group,
  xmax = group1)

Arguments

p	plot to add stats to
df	dataframe output from stat_activity_grouped(). Output must include columnw with names group, group1, q.value and/or p.value.
val	values to add to plot. Default is q.value from stat_activity_grouped() output
y_loc	location of comparisson bars on graph. Default it y_loc column of df. Can also be numeric values.
xmin	start location of comparison bar. Default is group column of df.
xmax	stop location of comparison bar. Default is group1 column of df.

See Also

Other plot fuctions: plot_heatmap, plot_pcvariance

hesselberthlab/scrunchy documentation built on Nov. 11, 2019, 2:29 p.m.