plot_hairpin_coverage: Plot coverage across hairpins
In hesselberthlab/scrunchy: Single Cell Reconstruction of Functional Heterogeneity

Description Usage Arguments See Also Examples

Plot coverage across hairpins

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plot_hairpin_coverage(fsce, cell_ids = NULL, activities = NULL,
  expt = "haircut", meta = "rnaseq", color = "cell_id",
  use_points = FALSE)

`fsce`	`FunctionalSingleCellExperiment`
`cell_ids`	cell ids to include in coverage calculation or category from colData in rnaseq expt
`activities`	vector of activites to calculate coverage over. default is all present.
`expt`	Data to use for calculating variable features (default is `rnaseq`). Must be present in `names(fsce)`.
`meta`	Data to use to find cell_ids categories default is `rnaseq`
`color`	variable to use for coloring lines (defaults to "cell_id")
`use_points`	if TRUE add points to plot

Other plot functions: plot_activity, plot_dims

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plot_hairpin_coverage(fsce_small) + ggplot2::facet_wrap(~hairpin)

plot_hairpin_coverage(fsce_small, cell_ids = "k_cluster") + ggplot2::facet_wrap(~hairpin)