Description Usage Arguments Value

Log normalization

1 | ```
log_normalize(mat, constant = 10000)
``` |

`mat` |
input matrix |

`constant` |
multiply normalized counts by this scalar to prevent small numbers |

matrix of normalized values. Normalization performed by dividing by column sums (total counts per cell) and scaled by a constant. Log values are returned with a pseudocount of 1.

hesselberthlab/scrunchy documentation built on Dec. 11, 2018, 1:30 a.m.

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