log_normalize: Log-normalize a matrix
In hesselberthlab/scrunchy: Single Cell Reconstruction of Functional Heterogeneity
Description
Usage
Arguments
Value
See Also
Description
Normalization performed by dividing by column sums (total counts per cell)
and scaled by a constant. Log values are returned with a pseudocount of 1.
Usage
1
log_normalize(mat, constant = 10000)
Arguments
mat
input matrix
constant
multiply normalized counts by this scalar to prevent small
numbers
Value
matrix of normalized values.
See Also
Other normalization methods: clr_normalize
hesselberthlab/scrunchy documentation built on Nov. 11, 2019, 2:29 p.m.
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Description Usage Arguments Value See Also
Description
Normalization performed by dividing by column sums (total counts per cell) and scaled by a constant. Log values are returned with a pseudocount of 1.
Usage
1 | log_normalize(mat, constant = 10000)
|
Arguments
mat |
input matrix |
constant |
multiply normalized counts by this scalar to prevent small numbers |
Value
matrix of normalized values.
See Also
Other normalization methods: clr_normalize
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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