create_fsce: Create a functional single-cell experiment

Description Usage Arguments Value Examples

View source: R/fsce.R

Description

A FunctionalSingleCellExperiment is implemented as a MultiAssayExperiment with one or more SingleCellExperiments (sce). One of these is a single-cell mRNA sequencing experiment that defines mRNA counts for single cells. Other sces include functional data from haircut.

Usage

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create_fsce(expt_list)

Arguments

expt_list

a list mapping experiment names to SingleCellExperiments created by an create_ function.

Value

MultiAssayExperiment containing one or more SingleCellExperiment.

Examples

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# this is identical to the `fsce_small` data set:
create_fsce(
  list(
    rnaseq = create_sce_rnaseq(scrunchy_data("mrna/")),
    haircut = create_sce_haircut(scrunchy_data("haircut/"))
  )
)

hesselberthlab/scrunchy documentation built on Nov. 11, 2019, 2:29 p.m.