calc_hairpin_coverage: Calculate coverage across hairpins
In hesselberthlab/scrunchy: Single Cell Reconstruction of Functional Heterogeneity
Description
Usage
Arguments
Examples
Description
Calculate coverage across hairpins
Usage
1
2
calc_hairpin_coverage(fsce, cell_ids = NULL, activities = NULL,
expt = "haircut", meta = "rnaseq")
Arguments
fsce
FunctionalSingleCellExperiment
cell_ids
cell ids to include in coverage calculation or category from colData in rnaseq expt
activities
vector of activites to calculate coverage over. default is all present.
expt
Data to use for calculating variable features
(default is rnaseq). Must be present in names(fsce).
meta
Data to use to find cell_ids categories default is rnaseq
Examples
1
hesselberthlab/scrunchy documentation built on Nov. 11, 2019, 2:29 p.m.
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Description Usage Arguments Examples
Description
Calculate coverage across hairpins
Usage
1 2 | calc_hairpin_coverage(fsce, cell_ids = NULL, activities = NULL,
expt = "haircut", meta = "rnaseq")
|
Arguments
fsce |
|
cell_ids |
cell ids to include in coverage calculation or category from colData in rnaseq expt |
activities |
vector of activites to calculate coverage over. default is all present. |
expt |
Data to use for calculating variable features
(default is |
meta |
Data to use to find cell_ids categories default is |
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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