create_sce_rnaseq: Create a single-cell mRNA-seq experiment

In hesselberthlab/scrunchy: Single Cell Reconstruction of Functional Heterogeneity

Description

Create a single-cell mRNA-seq experiment

Usage

create_sce_rnaseq(path, norm_method = "log_normalize")

Arguments

path	path to output matrices or R matrix object.
norm_method	Normalization method for counts. Normalized data is stored in logcounts. Set to NULL to skip normalization.

Value

SingleCellExperiment containing a sparseMatrix of counts

Examples

create_sce_rnaseq(scrunchy_data("mrna/"))

# using pre-loaded matrix
mat <- SingleCellExperiment::counts(fsce_small[["rnaseq"]])
create_sce_rnaseq(mat)

hesselberthlab/scrunchy documentation built on Nov. 11, 2019, 2:29 p.m.