filter_matrix: Filter and write a sparseMatrix keeping only specified...
In hesselberthlab/scrunchy: Single Cell Reconstruction of Functional Heterogeneity
Description
sparseMatrix will be read from disk, filtered, and then written to disk.
Usage
1
2
filter_matrix(matrix_path, barcodes_path, output_path,
strip_10x_suffix = TRUE)
Arguments
matrix_path
path to directory with mtx matrix
barcodes_path
path to barcodes.tsv.gz file generated by 10x count
output_path
path for output files. matrix.mtx.gz, barcodes.tsv.gz and
features.tsv.gz will be generated at the supplied path
strip_10x_suffix
if TRUE, remove 10x suffix from barcodes read from
barcodes_path (default = TRUE)
hesselberthlab/scrunchy documentation built on Nov. 11, 2019, 2:29 p.m.
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Description
sparseMatrix will be read from disk, filtered, and then written to disk.
Usage
1 2 | filter_matrix(matrix_path, barcodes_path, output_path,
strip_10x_suffix = TRUE)
|
Arguments
matrix_path |
path to directory with mtx matrix |
barcodes_path |
path to barcodes.tsv.gz file generated by 10x count |
output_path |
path for output files. matrix.mtx.gz, barcodes.tsv.gz and features.tsv.gz will be generated at the supplied path |
strip_10x_suffix |
if TRUE, remove 10x suffix from barcodes read from
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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