richDAVID: Functional enrichment analysis with DAVID
In hurlab/RichR: Function Enrichment analysis and Network construction

richDAVID

R Documentation

Functional enrichment analysis with DAVID

Description

Functional enrichment analysis with DAVID

Usage

richDAVID(
  gene,
  keytype = "ENTREZ_GENE_ID",
  species = "human",
  anntype = "GOTERM_BP_FAT",
  universe,
  pvalue = 0.05,
  padj = NULL,
  minSize = 2,
  maxSize = 500,
  keepRich = TRUE,
  filename = NULL,
  padj.method = "BH",
  sep = ",",
  david.user = "richR@und.edu"
)

Arguments

`gene`	vector contains gene names
`keytype`	key type export
`anntype`	GOTERM_BP_FAT, KEGG_PATHWAY,GOTERM_CC_FAT
`pvalue`	cutoff pvalue
`padj`	cutoff p adjust value
`david.user`	richR@und.edu

Value

Annot object

Author(s)

Kai Guo

Examples

## Not run: 
hsako <- buildAnnot(species="human",keytype="ENTREZID",anntype = "KEGG")
hsako <- as.data.frame(hsako)
gene <- sample(unique(hsako$GeneID),1000)
res <- richDAVID(gene,keytype="ENTREZID",species="human")

## End(Not run)

hurlab/RichR documentation built on Feb. 5, 2024, 8:07 p.m.