richGSEA_internal | R Documentation |
Enrichment analysis for any type of annotation data
richGSEA_internal(
x,
object,
keytype = "",
pvalue = 0.05,
padj = NULL,
minSize = 15,
maxSize = 500,
padj.method = "BH",
organism = NULL,
ontology = NULL,
table = TRUE,
sep = ","
)
x |
a vector include all log2FC with gene name |
object |
annotation file for all genes |
pvalue |
pvalue cutoff value |
padj |
adjust p value cut off method |
minSize |
Minimal size of a gene set to test. All pathways below the threshold are excluded. |
maxSize |
Maximal size of a gene set to test. All pathways above the threshold are excluded. |
padj.method |
p value adjust method |
table |
leadingEdge as vector |
sep |
character string used to separate the genes when concatenating |
Kai Guo
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