clusterSystems | Cluster Systems |
complexExpHeatmap | 'complexExpHeatmap' Heatmap of the complex subunits... |
domainEnrichment | Domain enrichment in a desired system. |
EnrichDepletTF | EnrichDepletTF. |
expr_dist | Expression Distance. |
exProf | Gene Expression Profile. |
fetchComponents | 'fetchComponents' get all gene symbols in a system. |
fetchData | 'fetchData' read a prepared dataset from a repository. |
findSTRINGKnodes | 'findSTRINGKnodes' output the K node values for vertices in... |
genePairsShuffle | 'genePairsShuffle' Generate Coexpression correlation... |
getCoExpProfile | 'getCoExpProfile' Generate a coexpression profile |
getComplexmyQNXP | 'getComplexmyQNXP' Extract expression profile for the complex... |
getGeneticInteractome | getGeneticInteractome |
getpValue | 'getpValue' calculate p-Value |
getSysInteractions | getSysInteractions |
hypothesize | hypothesize |
installHumanGenomeAnnotation | 'installHumanGenomeAnnotation' install Human genome... |
jaccard_dist | Jaccard Distance. |
makeEMAP | Generate the genetic interpretation map of BioGrid GGI tags... |
makeGMAP | Generate the genetic interpretation map of BioGrid GGI tags. |
makeSeq | 'makeSeq' output a random DNA sequence. |
myScatterPlot | 'myScatterPlot()' Expression and Semantic Similarity |
pairExpHist | 'pairExpHist' Generate distribution of coexpression... |
PathwayEnrichment | 'PathwayEnrichment' a function that perform a pathway... |
processmyQNXP | 'processmyQNXP' Load and process expression-profiles |
rptGC | rptGC.R |
STRINGExplore | STRINGExplore |
SyDBgetIDforKey | 'SyDBgetIDforKey' fetch an ID from a systems database. |
SyDBgetRootSysIDs | 'SyDBgetRootSysIDs' fetch root-system IDs from a systems... |
SyDBgetSysSymbols | 'SyDBgetSysSymbols' fetch root-system IDs from a systems... |
SyDBgetValForID | 'SyDBgetValForID' fetch an an attribute value for an ID from... |
SyDBinvalid | 'SyDBinvalid' validate a systems database. |
SyDBTree | 'SyDBTree' print a (sub)system as a tree |
sysCorGenes | sysUpCorGenes. |
sysExProf | sysExProf. |
sysGTRDgenes | sysGTRDgenes. |
sysGTRDtf | sysGTRDtf. |
System_Expression | System level expression values. |
tf_dist | Transcription Factor Distance |
visualizeInteractions | visualizeInteractions |
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