sysExProf: sysExProf.
In hyginn/BCB420.2019.ESA: Exploratory Systems Analysis Tools
Description
Usage
Arguments
Value
Details
Author(s)
See Also
Examples
Description
sysExProf Loads expression-profiles of chosen genes
Usage
1
sysExProf(GeneSym)
Arguments
GeneSym
(character) A vector of length > 0L of HGNC symbols.
Value
(numeric) A matrix with row dimensions that are equal to the
number of genes of the GeneSym vector that has
expression data for all of the experiments.
The column dimensions corresponds to the number of
microarray experiments in the expression profile
dataset. The matrix contains the expression profiles
of genes that have data for all experiments in the
expression profile source dataset. The rows names
are the HGNC sybmols and the column names are the
experiments' names.
Details
This is a helper function. The expression profiles were compiled
from microarray experiments downloaded from GEO, and quantile normalized. For the
function that fetches the database, see fetchData.
Author(s)
Sapir Labes (aut)
See Also
fetchData Fetches the requested dataset.
Examples
1
2
3
4
5
## Not run:
# Expression profiles for "BRCA1" and "AR" genes.
# sysExProf(GeneSym = c("BRCA1", "AR"))
## End(Not run)
hyginn/BCB420.2019.ESA documentation built on May 29, 2019, 1:23 p.m.
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Description Usage Arguments Value Details Author(s) See Also Examples
Description
sysExProf Loads expression-profiles of chosen genes
Usage
1 | sysExProf(GeneSym)
|
Arguments
GeneSym |
(character) A vector of length > 0L of HGNC symbols. |
Value
(numeric) A matrix with row dimensions that are equal to the number of genes of the GeneSym vector that has expression data for all of the experiments. The column dimensions corresponds to the number of microarray experiments in the expression profile dataset. The matrix contains the expression profiles of genes that have data for all experiments in the expression profile source dataset. The rows names are the HGNC sybmols and the column names are the experiments' names.
Details
This is a helper function. The expression profiles were compiled
from microarray experiments downloaded from GEO, and quantile normalized. For the
function that fetches the database, see fetchData.
Author(s)
Sapir Labes (aut)
See Also
fetchData Fetches the requested dataset.
Examples
1 2 3 4 5 | ## Not run:
# Expression profiles for "BRCA1" and "AR" genes.
# sysExProf(GeneSym = c("BRCA1", "AR"))
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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