findSTRINGKnodes: 'findSTRINGKnodes' output the K node values for vertices in...
In hyginn/BCB420.2019.ESA: Exploratory Systems Analysis Tools
Description
Usage
Arguments
Value
Examples
Description
findSTRINGKnodes outputs a the K node values (as defined by Cornish & Markowetz, 2014),
a measure of the vertex association to the high-weighted vertices defined by the input
curated gene system 'sys'. Also plots the knode the top n knode values
Usage
1
findSTRINGKnodes(sys)
Arguments
sys
(character) 5-character system code of genes
Value
(numeric) Knode values
Examples
1
2
3
4
5
## Not run:
# Find the Knodes values for genes in the STRING graph sorted by association to PHALY genes
findSTRINGKnodes("PHALY")
## End(Not run)
hyginn/BCB420.2019.ESA documentation built on May 29, 2019, 1:23 p.m.
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Description Usage Arguments Value Examples
Description
findSTRINGKnodes outputs a the K node values (as defined by Cornish & Markowetz, 2014),
a measure of the vertex association to the high-weighted vertices defined by the input
curated gene system 'sys'. Also plots the knode the top n knode values
Usage
1 | findSTRINGKnodes(sys)
|
Arguments
sys |
(character) 5-character system code of genes |
Value
(numeric) Knode values
Examples
1 2 3 4 5 | ## Not run:
# Find the Knodes values for genes in the STRING graph sorted by association to PHALY genes
findSTRINGKnodes("PHALY")
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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