Description Usage Arguments Details Value Author(s) See Also Examples
tf_dist
Calculate upstream transcription factor binding site distance between 2
genes.
1 | tf_dist(gene1, gene2, geneList)
|
gene1 |
String, HGNC symbol for the first gene. |
gene2 |
String, HGNC symbol for the second gene. |
geneList |
A list of lists of transcription factors than have binding
sites upstream of genes. Generated by calling |
Calculate the distance/dissimilarity of upstream transcription factors of 2 genes. Similarity is taken to be the Jaccard Index of the set overlap between the 2 transcription factors sets. Distance is then taken to be 1 - similarity.
The similarity score of gene1 and gene2: number of shared upstream transcription factors.
Rachel Silverstein (aut)
fetchData
For format of geneList
1 2 3 4 5 6 |
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