hypothesize: hypothesize
In hyginn/BCB420.2019.ESA: Exploratory Systems Analysis Tools

Description Usage Arguments Value Author(s) Examples

hypothesize

1	hypothesize(network, ppi_ggi = NULL)

`network`	(dataframe) 3-column dataframe of physically-interacting system components with their genetic interactions. The first two columns denote the interacting pair; the third is the type of genetic interaction.
`ppi_ggi`	(dataframe) An optional 3-column dataframe to specify subset of `mySys` for which both PPI and GGI data is available. The first two columns denote the interacting pair; the third is the type of genetic interaction.

(NULL) The function plots the graph of system components.

Nada Elnour, nada.elnour@mail.utoronto.ca

hypothesize generates an annotated hypothesis graph whose nodes are components of mySys and edges are GGI interpretations in either EMAP or GMAP

## Not run: 
# Plot the graph of SLIGR components under stringent and relaxed conditions
mySys <- getSysInteractions("SLIGR", criterion = "stringent")
mySys2 <- getSysInteractions("SLIGR", criterion = "relaxed")
hypothesize(mySys) # draws hypothesis graph(s)
hypothesize(mySys2, mySys) # draws hypothesis graph(s)

## End(Not run)