pairExpHist: 'pairExpHist' Generate distribution of coexpression...
In hyginn/BCB420.2019.ESA: Exploratory Systems Analysis Tools
Description
Usage
Arguments
Value
Examples
Description
pairExpHist Generate distribution of coexpression correlations between
randomly chosen gene pairs, compared to the distribution of
shuffled expression values for significantly differentially
coexpressed genes. In addition, this function displays the
distribution in a histogram for visualization and interpretation
Usage
1
pairExpHist(expProfile)
Arguments
expProfile
(data frame) gene pairs with co expression correlation represented
in a data frame
Value
(data frame) If there are significantly coexpressed gene pairs,
extract the expression profile data frame with two genes
that are significantly differentially coexpressed, their
correlation and p-value for their coexpression. Otherwise,
return the above information for all the gene pairs
Examples
1
2
3
4
5
6
7
## Not run:
complex <- "MDC1-MRN-ATM-FANCD2 complex"
complexExpHeatmap(complex)
expProfile <- getCoExpProfile(complex)
pairExpHist(expProfile)
## End(Not run)
hyginn/BCB420.2019.ESA documentation built on May 29, 2019, 1:23 p.m.
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Description Usage Arguments Value Examples
Description
pairExpHist Generate distribution of coexpression correlations between
randomly chosen gene pairs, compared to the distribution of
shuffled expression values for significantly differentially
coexpressed genes. In addition, this function displays the
distribution in a histogram for visualization and interpretation
Usage
1 | pairExpHist(expProfile)
|
Arguments
expProfile |
(data frame) gene pairs with co expression correlation represented in a data frame |
Value
(data frame) If there are significantly coexpressed gene pairs, extract the expression profile data frame with two genes that are significantly differentially coexpressed, their correlation and p-value for their coexpression. Otherwise, return the above information for all the gene pairs
Examples
1 2 3 4 5 6 7 | ## Not run:
complex <- "MDC1-MRN-ATM-FANCD2 complex"
complexExpHeatmap(complex)
expProfile <- getCoExpProfile(complex)
pairExpHist(expProfile)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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