Files in hyginn/BCB420.2019.ESA
Exploratory Systems Analysis Tools
.Rbuildignore
.Rprofile
.gitignore
.travis.yml
BCB420.2019.ESA.Rproj
DESCRIPTION
LICENSE
MD5
NAMESPACE
NEWS
PullRequestReviewNotes.md
R/EnrichDepletTF.R
R/GeneCorVSgotermEDA.R
R/STRINGExplore.R
R/SyDButils.R
R/System_Expression.R
R/clusterSystems.R
R/combine_distance_matrices.R
R/domainEnrichment.R
R/exProf.R
R/expr_dist.R
R/fetchComponents.R
R/fetchData.R
R/findSTRINGKnodes.R
R/getGeneticInteractome.R
R/get_best_matches.R
R/hypothesize.R
R/jaccard_dist.R
R/jaccard_index_p_values.R
R/makeMaps.R
R/makeSeq.R
R/make_distance_matrices_list.R
R/make_matrix.R
R/make_venn_diagram.R
R/pathwayEnrich.R
R/predictDirectedNetworks.R
R/rptGC.R
R/subunitcoExpressionAnalysis.R
R/tf_dist.R
R/zzz.R
README.md
data/rptGC.RData
dev/checkEnds.R
dev/functionTemplate.R
dev/grepSrc.R
dev/makeMD5.R
dev/pBar.R
dev/rptTwee.R
inst/CITATION
inst/extdata/humInt.txt
inst/extdata/test_lseq.dat
inst/img/QN-GEOprofileCorrelations.svg
inst/img/complexExpressionProfileCorrelation.png
inst/img/enrichedDomain.png
inst/img/exampleExpressionHeatmap.png
inst/img/highPairwiseCorrelation.svg
inst/img/lowPairwiseCorrelation.svg
inst/img/pairwiseCorrelation.png
inst/scripts/STRINGExplore_PHALY-Example.R
inst/scripts/clusterSystemsScript.R
inst/scripts/mapSTRING.R
inst/scripts/scriptTemplate.R
man/EnrichDepletTF.Rd
man/PathwayEnrichment.Rd
man/STRINGExplore.Rd
man/SyDBTree.Rd
man/SyDBgetIDforKey.Rd
man/SyDBgetRootSysIDs.Rd
man/SyDBgetSysSymbols.Rd
man/SyDBgetValForID.Rd
man/SyDBinvalid.Rd
man/System_Expression.Rd
man/clusterSystems.Rd
man/complexExpHeatmap.Rd
man/domainEnrichment.Rd
man/exProf.Rd
man/expr_dist.Rd
man/fetchComponents.Rd
man/fetchData.Rd
man/findSTRINGKnodes.Rd
man/genePairsShuffle.Rd
man/getCoExpProfile.Rd
man/getComplexmyQNXP.Rd
man/getGeneticInteractome.Rd
man/getSysInteractions.Rd
man/getpValue.Rd
man/hypothesize.Rd
man/installHumanGenomeAnnotation.Rd
man/jaccard_dist.Rd
man/makeEMAP.Rd
man/makeGMAP.Rd
man/makeSeq.Rd
man/myScatterPlot.Rd
man/pairExpHist.Rd
man/processmyQNXP.Rd
man/rptGC.Rd
man/sysCorGenes.Rd
man/sysExProf.Rd
man/sysGTRDgenes.Rd
man/sysGTRDtf.Rd
man/tf_dist.Rd
man/visualizeInteractions.Rd
rptPlus.Rproj
tests/testthat.R
tests/testthat/helper-functions.R
tests/testthat/test_SyDButils.R
tests/testthat/test_makeSeq.R
vignettes/.gitignore
vignettes/BCB420.2019.ESA-Vignette.Rmd
vignettes/BCB420.2019.ESA-Vignette_McNeil.Rmd
vignettes/BCB420.2019.ESA-Vignette_PredictRegulatoryNetworks.Rmd
vignettes/BCB420.2019.ESA-bibliography.bib
vignettes/BCB420.2019.ESA-subunitcoExpressionAnalysis.Rmd
vignettes/BCB420.2019.EnrichDepletTF.Rmd
vignettes/BCB420.2019.STRINGExplore.Rmd
vignettes/dataDetails-BioGRID.Rmd
vignettes/dataDetails-HGNCreference.Rmd
vignettes/dataDetails-STRINGactions.Rmd
vignettes/dataDetails-STRINGedges0.8.Rmd
vignettes/dataDetails-TBD.Rmd
vignettes/domainEnrichment-Vignette.Rmd
vignettes/findSTRINGKnodes.Rmd
vignettes/pathwayEnrichment.Rmd
