getSysInteractions: getSysInteractions

In hyginn/BCB420.2019.ESA: Exploratory Systems Analysis Tools

Description

getSysInteractions

Usage

getSysInteractions(sysName, criterion = "stringent")

Arguments

sysName	(string|vector of strings) Specifies the systems of interest
criterion	(string) Either "stringent" or "relaxed", specifying if only GGI between physical interactors should be selected.

Value

(dataframe) A 3-column dataframe of system components and either their GGI between physical interactors should be selected (iff criterion == "stringent") or all GGI of physical interactors (iff relaxed == "stringent"). The first two columns denote the interacting pair; the third is the type of genetic interaction.

Author(s)

Nada Elnour, [e-mail]

getSysInteractions filter system by physically-interacting components and return their genetic interactions

Examples

## Not run: 
# Get SLIGR physical interactors and return the genetic interactions between
# them
mySys <- getSysInteractions("SLIGR", criterion = "stringent")

## End(Not run)

hyginn/BCB420.2019.ESA documentation built on May 29, 2019, 1:23 p.m.