fetchData: 'fetchData' read a prepared dataset from a repository.
In hyginn/BCB420.2019.ESA: Exploratory Systems Analysis Tools

Description Usage Arguments Value Details Examples

fetchData loads and returns datasets from a data repository. When invoked without parameters, a list of available datasets is printed. When invoked with a parameter set, the intended dataset is fetched with readRDS and returned.

1	fetchData(set)

set

(character) name of the requested dataset

a dataset, usually either a list or a data frame, or NULL (invisibly) if no dataset was specified or the requested dataset is not in the list of available datasets.

For the HGNCreference dataset, see ...
For the GTRD derived transcription factor datasets GTRDgeneTFs and GTRDTFgenes, see ...
For the BioGRID protein-protein interaction dataset, see details in the BioGRID data vignette (or load the vignette with vignette("dataDetails-BioGRID", package = "BCB420.2019.ESA")).
For the STRING database derived datasets STRINGedges0.9, STRINGedges0.8, and STRINGactions, see ...
For the InterPro database datasets genesIPR, and IPRgenes dataset, see ...
For the expression profiles dataset GEOprofiles, see ...
For the systems database dataset SysDB, see ...
The Reactome dataset ReactomeSym is currently undocumented.
There are two CORUM datasets: complexSymbol and symbolComplex. These are lists of CORUM IDs and the genes the complexes contain, and vice versa. Creation details are currently undocumented.