Description Usage Arguments Value Details Examples
fetchData
loads and returns datasets from a data repository. When
invoked without parameters, a list of available datasets is
printed. When invoked with a parameter set
, the
intended dataset is fetched with readRDS
and returned.
1 | fetchData(set)
|
set |
(character) name of the requested dataset |
a dataset, usually either a list
or a data frame
, or
NULL
(invisibly) if no dataset was specified or the requested
dataset is not in the list of available datasets.
For the HGNCreference
dataset, see ...
For the GTRD derived transcription factor datasets
GTRDgeneTFs
and GTRDTFgenes
, see ...
For the BioGRID protein-protein interaction dataset, see details in
the BioGRID data vignette
(or load the vignette with vignette("dataDetails-BioGRID",
package = "BCB420.2019.ESA")
).
For the STRING database derived datasets STRINGedges0.9
,
STRINGedges0.8
, and STRINGactions
, see ...
For the InterPro database datasets genesIPR
, and
IPRgenes
dataset, see ...
For the expression profiles dataset GEOprofiles
, see ...
For the systems database dataset SysDB
, see ...
The Reactome dataset ReactomeSym
is currently undocumented.
There are two CORUM datasets: complexSymbol
and
symbolComplex
. These are lists of CORUM IDs and the genes
the complexes contain, and vice versa. Creation details are
currently undocumented.
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