getCoExpProfile: 'getCoExpProfile' Generate a coexpression profile
In hyginn/BCB420.2019.ESA: Exploratory Systems Analysis Tools
Description
Usage
Arguments
Value
See Also
Examples
Description
getCoExpProfile Generate a coexpression profile with all possible pairs of
genes in the complex and their Pearson Correlation Coefficients represent how
coexpressed the gene pairs are. This function also displays a histogram to show the
distribution of the coexpression correlation. See EnrichDepletTF for
expProfile generate (line 149-154)
Usage
1
Arguments
complex
(char) name of the complex
Value
(data frame) a data frame with there columns: the first gene, the second gene
and the Pearson Correlation Coefficients for their coexpression
See Also
Examples
1
2
complex <- "MDC1-MRN-ATM-FANCD2 complex"
expProfile <- getCoExpProfile(complex)
hyginn/BCB420.2019.ESA documentation built on May 29, 2019, 1:23 p.m.
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Description Usage Arguments Value See Also Examples
Description
getCoExpProfile Generate a coexpression profile with all possible pairs of
genes in the complex and their Pearson Correlation Coefficients represent how
coexpressed the gene pairs are. This function also displays a histogram to show the
distribution of the coexpression correlation. See EnrichDepletTF for
expProfile generate (line 149-154)
Usage
1 |
Arguments
complex |
(char) name of the complex |
Value
(data frame) a data frame with there columns: the first gene, the second gene and the Pearson Correlation Coefficients for their coexpression
See Also
Examples
1 2 | complex <- "MDC1-MRN-ATM-FANCD2 complex"
expProfile <- getCoExpProfile(complex)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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