myScatterPlot: 'myScatterPlot()' Expression and Semantic Similarity

In hyginn/BCB420.2019.ESA: Exploratory Systems Analysis Tools

Description

myScatterPlot() Investigates relationship of expression correlation and semantic similarity of input genes and produces plots and summary of model info. [GOSemSim package](http://bioconductor.org/packages/release/bioc/html/GOSemSim.html) [org.Hs.eg.db data package](https://bioconductor.org/packages/release/data/annotation/html/org.Hs.eg.db.html)

Usage

myScatterPlot(geneSet)

Arguments

geneSet

A set of genes of interest to investigate

Value

(list) list of graphs containing A heatmap of co-expression correlation of each pair of genes in the geneSet, A heatmap of semantic similarity of each pair of genes,and A scatterplot of correlation vs Go similarity with summary of linear model built by correlation vs Go similarity

Author(s)

Yuhan Zhang (aut)

Examples

## Not run: 
geneSet <- c("AMBRA1","ATG14","ATP2A1","ATP2A2","ATP2A3")
myScatterPlot(geneSet)

## End(Not run)

hyginn/BCB420.2019.ESA documentation built on May 29, 2019, 1:23 p.m.