visualizeInteractions: visualizeInteractions

Description Usage Arguments Author(s)

Description

visualizeInteractions

Usage

1
visualizeInteractions(network, emap, ppi_ggi, gmap)

Arguments

network

(dataframe) 3-column dataframe of physically-interacting system components with their genetic interactions. The first two columns denote the interacting pair; the third is the type of genetic interaction.

emap

T(dataframe) An 11-by-3 dataframe mapping BioGrid GGI tag to its interpretation assuming that the system's components also interact physically. The first column contains the official BioGRID GGI tags; the second contains interpreted relationships under the assumption; the third contains notes on interpretation.

ppi_ggi

(dataframe) An optional 3-column dataframe to specify subset of mySys for which both PPI and GGI data is available. The first two columns denote the interacting pair; the third is the type of genetic interaction.

gmap

(dataframe) An 11-by-2 dataframe mapping BioGrid GGI tag to its interpretation. The first column contains the official BioGRID GGI tags; the second contains interpreted relationships.

Author(s)

Nada Elnour, nada.elnour@mail.utoronto.ca

A helper function of hypothesize that plots the hypothesis graph


hyginn/BCB420.2019.ESA documentation built on May 29, 2019, 1:23 p.m.