generate_hapmap_file: Create hapmap file for GWAMA
In isglobal-brge/EASIER: EwAS: quality control, meta-analysIs and EnRichment
View source: R/generate_hapmap_file.R
generate_hapmap_file R Documentation
Create hapmap file for GWAMA
Description
Create map file for GWAMA, needed in Manhattan plots. The hapmap correspondos to Illumina data and depends on array type.
Usage
generate_hapmap_file(artype, outputfile = "hapmap.map")
Arguments
artype
string Illumina arrat type
outputfile
string. Optional, relative or complete path with a file name for a hapmap, if not provided hapmap file is created in current directory as hapmap.map
gwama.dir
string. Route to GWAMA binary
Value
Disk file with hapmap
isglobal-brge/EASIER documentation built on Feb. 12, 2024, 6:30 p.m.
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View source: R/generate_hapmap_file.R
| generate_hapmap_file | R Documentation |
Create hapmap file for GWAMA
Description
Create map file for GWAMA, needed in Manhattan plots. The hapmap correspondos to Illumina data and depends on array type.
Usage
generate_hapmap_file(artype, outputfile = "hapmap.map")
Arguments
artype |
string Illumina arrat type |
outputfile |
string. Optional, relative or complete path with a file name for a hapmap, if not provided hapmap file is created in current directory as hapmap.map |
gwama.dir |
string. Route to GWAMA binary |
Value
Disk file with hapmap
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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