generate_hapmap_file: Create hapmap file for GWAMA

In isglobal-brge/EASIER: EwAS: quality control, meta-analysIs and EnRichment

Create hapmap file for GWAMA

Description

Create map file for GWAMA, needed in Manhattan plots. The hapmap correspondos to Illumina data and depends on array type.

Usage

generate_hapmap_file(artype, outputfile = "hapmap.map")

Arguments

artype	string Illumina arrat type
outputfile	string. Optional, relative or complete path with a file name for a hapmap, if not provided hapmap file is created in current directory as hapmap.map
gwama.dir	string. Route to GWAMA binary

Value

Disk file with hapmap

isglobal-brge/EASIER documentation built on Sept. 25, 2024, 10:50 p.m.