filterLowRepresentedCpGsinCohort: Call Rate filter

View source: R/filterLowRepresentedCpGsinCohort.R

filterLowRepresentedCpGsinCohortR Documentation

Call Rate filter

Description

filters out all CpGs with missing call rates exceeding the provided value

Usage

filterLowRepresentedCpGsinCohort(data, colname, pcmissing, Ntotal, fileresume)

Arguments

data

dataframe with data to be filtered

colname

string, column name that contains number of samples for each CpG

pcmissing

numeric, máximum percent of missing samples allowed

Ntotal

numeric, Number of samples in cohort

Value

filtered dataframe if colname exists


isglobal-brge/EASIER documentation built on Feb. 12, 2024, 6:30 p.m.