filterLowRepresentedCpGsinCohort: Call Rate filter
In isglobal-brge/EASIER: EwAS: quality control, meta-analysIs and EnRichment
View source: R/filterLowRepresentedCpGsinCohort.R
filterLowRepresentedCpGsinCohort R Documentation
Call Rate filter
Description
filters out all CpGs with missing call rates exceeding the provided value
Usage
filterLowRepresentedCpGsinCohort(data, colname, pcmissing, Ntotal, fileresume)
Arguments
data
dataframe with data to be filtered
colname
string, column name that contains number of samples for each CpG
pcmissing
numeric, máximum percent of missing samples allowed
Ntotal
numeric, Number of samples in cohort
Value
filtered dataframe if colname exists
isglobal-brge/EASIER documentation built on Sept. 25, 2024, 10:50 p.m.
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View source: R/filterLowRepresentedCpGsinCohort.R
| filterLowRepresentedCpGsinCohort | R Documentation |
Call Rate filter
Description
filters out all CpGs with missing call rates exceeding the provided value
Usage
filterLowRepresentedCpGsinCohort(data, colname, pcmissing, Ntotal, fileresume)
Arguments
data |
dataframe with data to be filtered |
colname |
string, column name that contains number of samples for each CpG |
pcmissing |
numeric, máximum percent of missing samples allowed |
Ntotal |
numeric, Number of samples in cohort |
Value
filtered dataframe if colname exists
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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