get_descriptives_ChromatineStates: Get descriptives Chromatine States

In isglobal-brge/EASIER: EwAS: quality control, meta-analysIs and EnRichment

Get descriptives Chromatine States

Description

Get counts, proportions and plots for Chromatine States CpGs attending to any criteria as Bonferroni, FDR

Usage

get_descriptives_ChromatineStates(
  data,
  positions,
  criteria,
  namecriteria,
  outputdir = ".",
  outputfile = NULL
)

Arguments

data	string. CpG
positions	array string. with colnames containing chromatin state positions
criteria	boolean. Boolean with criteria like Bonferroni, FDR,...
namecriteria	string, criteria name for plot and to add to descriptives
outputdir	string. Output path to store file with results, by default results are written in current dir
outputfile	string. File name to store results if no name is provided results are not written.The suffix "_DescChromStates.txt" and "_PlotChromStates.pdf" are added respectively for descriptive file and plots.

Value

File with descriptive and plots from CpG Annotation

isglobal-brge/EASIER documentation built on July 17, 2025, 2:14 a.m.