getAllChromStateOR: Significative variable OR for all cromatin state

In isglobal-brge/EASIER: EwAS: quality control, meta-analysIs and EnRichment

Significative variable OR for all cromatin state

Description

Get regression by cromatin state taking in to account a significative variable parameter like FDR values. This function gets all chromatin state regressions and optionally store results in a file

Usage

getAllChromStateOR(
  significative,
  chromstate,
  outputdir = ".",
  outputfile = NULL,
  plots = TRUE
)

Arguments

significative	numerical. Variable to take in to account as significative variable, could be FDR, p-value,...
outputdir	string. Output path to store file with results, by default results are written in current dir
outputfile	string. File name to store results if no name is provided results are not written.The suffix "RegressionFDR_States" is added to file name provided.
plots	boolean. If plot is TRUE, plot results
chromstates	dataframe with all Cromatin state values to perform regression

isglobal-brge/EASIER documentation built on Sept. 25, 2024, 10:50 p.m.