getAllChromStateOR: Significative variable OR for all cromatin state
In isglobal-brge/EASIER: EwAS: quality control, meta-analysIs and EnRichment

getAllChromStateOR

R Documentation

Significative variable OR for all cromatin state

Description

Get regression by cromatin state taking in to account a significative variable parameter like FDR values. This function gets all chromatin state regressions and optionally store results in a file

Usage

getAllChromStateOR(
  significative,
  chromstate,
  outputdir = ".",
  outputfile = NULL,
  plots = TRUE
)

Arguments

`significative`	numerical. Variable to take in to account as significative variable, could be FDR, p-value,...
`outputdir`	string. Output path to store file with results, by default results are written in current dir
`outputfile`	string. File name to store results if no name is provided results are not written.The suffix "RegressionFDR_States" is added to file name provided.
`plots`	boolean. If plot is TRUE, plot results
`chromstates`	dataframe with all Cromatin state values to perform regression