get_descriptives_RelativetoIsland: Get descriptives relatives to Island

In isglobal-brge/EASIER: EwAS: quality control, meta-analysIs and EnRichment

Get descriptives relatives to Island

Description

Get counts, proportions and plots for relative position to Island CpGs attending to any criteria as Bonferroni, FDR

Usage

get_descriptives_RelativetoIsland(
  position,
  criteria,
  namecriteria,
  outputdir = ".",
  outputfile = NULL
)

Arguments

position	string. CpG relative position to Island (Island, N_Shelf, N_Shore, OpenSea, S_Shelf, S_Shore )
criteria	boolean. Boolean with criteria like Bonferroni, FDR,...
namecriteria	string, criteria name for plot and to add to descriptives
outputdir	string. Output path to store file with results, by default results are written in current dir
outputfile	string. File name to store results if no name is provided results are not written.The suffix "_DescIslands.txt" and "_PlotIslands.pdf" are added respectively for descriptive file and plots.

Value

File with descriptive and plots from CpG Annotation

isglobal-brge/EASIER documentation built on Sept. 25, 2024, 10:50 p.m.