getAllFisherTest: Fisher test

In isglobal-brge/EASIER: EwAS: quality control, meta-analysIs and EnRichment

Fisher test

Description

Get all Fisher tests taking in to account a significative variable parameter like FDR values. This function gets all chromatin state regressions and optionally store results in a file

Usage

getAllFisherTest(
  significative,
  position,
  outputdir = ".",
  outputfile = NULL,
  plots = TRUE
)

Arguments

significative	numerical. Variable to take in to account as significative variable, could be FDR, p-value,...
position	dataframe with all relative positions to island values to perform regression
outputdir	optional string. Output path to store file with results, by default results are written in current dir
outputfile	optional string. File name to store results if no name is provided results are not written.
plots	boolean. If plot is TRUE, plot results

isglobal-brge/EASIER documentation built on Sept. 25, 2024, 10:50 p.m.