getAllFisherTest: Fisher test
In isglobal-brge/EASIER: EwAS: quality control, meta-analysIs and EnRichment

getAllFisherTest

R Documentation

Fisher test

Description

Get all Fisher tests taking in to account a significative variable parameter like FDR values. This function gets all chromatin state regressions and optionally store results in a file

Usage

getAllFisherTest(
  significative,
  position,
  outputdir = ".",
  outputfile = NULL,
  plots = TRUE
)

Arguments

`significative`	numerical. Variable to take in to account as significative variable, could be FDR, p-value,...
`position`	dataframe with all relative positions to island values to perform regression
`outputdir`	optional string. Output path to store file with results, by default results are written in current dir
`outputfile`	optional string. File name to store results if no name is provided results are not written.
`plots`	boolean. If plot is TRUE, plot results