create_GWAMA_files: Creates GWAMA formatted files

In isglobal-brge/EASIER: EwAS: quality control, meta-analysIs and EnRichment

Creates GWAMA formatted files

Description

Creates files formatted with GWAMA specifications to perform a meta-analysis with GWAMA software

Usage

create_GWAMA_files(qcpath, file, gwmodelpath, N, llowCpGs = NULL)

Arguments

qcpath	string. Path with Quality Control results (_QCData.txt files)
gwmodelpath	string. Path to store gwama meta-analisis files, all gwama files related to the same meta-analysis must be under the same path
N	number. Number of samples in model
llowCpGs	Optiona, numeric array with all CpGs with low representation in models.
filename	string. File name to formatt to use with GWAMA

Value

files with model data formatted for GWAMA

isglobal-brge/EASIER documentation built on Sept. 25, 2024, 10:50 p.m.