adjust_data: Adjust p-value by Bonferroni or FDR

In isglobal-brge/EASIER: EwAS: quality control, meta-analysIs and EnRichment

Adjust p-value by Bonferroni or FDR

Description

Update data with Bonferroni and FDR adjustment

Usage

adjust_data(cohort, cpval, bn = TRUE, fdr = TRUE, filename = NULL, N = 0)

Arguments

cohort	Dataframe with CpGs related data
cpval	String with p-value column name
bn	Boolean if TRUE appends bonferroni adjustment column
fdr	Boolean if TRUE appends FDR adjustment column
filename	Optional, filename to write results, if NULL no results are writed in a file
N	Optional, informative value to write to a file with other descriptive data related to significative p-values.

Value

Data frame with original data with bonferroni and fdr adjusted data sorted by p-value

isglobal-brge/EASIER documentation built on Feb. 12, 2024, 6:30 p.m.