get_consensusPdb_OverRepresentation: Get ConsensusPath Over Representation Enrichment

In isglobal-brge/EASIER: EwAS: quality control, meta-analysIs and EnRichment

Get ConsensusPath Over Representation Enrichment

Description

Get enrichment from consensusPathDb with over representation analysis

Usage

get_consensusPdb_OverRepresentation(
  acFSet,
  entityType,
  accNumbers,
  accType,
  outputdir = ".",
  outputfile = NULL
)

Arguments

entityType	Integer vector with column position that we are interested in
accNumbers	Optional, filename to write results, if NULL no results are writed in a file
accType	bolean, Optional, if true, prints text "Before QC" , else, prints "After QC"
outputfile,	filename to write results, if NULL no results are writed in a file

Value

list with enrichment

isglobal-brge/EASIER documentation built on Feb. 12, 2024, 6:30 p.m.