findOverlapValues: Find Overlaps between two genomics ranges

In isglobal-brge/EASIER: EwAS: quality control, meta-analysIs and EnRichment

Find Overlaps between two genomics ranges

Description

Find Overlaps between two genomics ranges and returns the coincident values. Used to search overlaps between CpGs (selected data) and Fetal Placenta (complete data)

Usage

findOverlapValues(selected, complete, outputdir = ".", outputfile = NULL)

Arguments

selected	Genomic Ranges Variable that we are interested to enrich with data obtained from 'comlete' genomic ranges
complete	Genomic Ranges with Fetal Placenta data 15 or 18 or other genomic ranges that overlaps with selected genomic ranges

Value

A list with the Overlap results

• "ranges"A subset by overlaps

• "hits"Coincident data between selected and complete

• "shits"Subject hits

• "qhits"Query hits

• "values"Coincident names associated to each position

isglobal-brge/EASIER documentation built on Sept. 25, 2024, 10:50 p.m.