getAllHypergeometricTest: HyperGeometric Test for positions relative to Island

In isglobal-brge/EASIER: EwAS: quality control, meta-analysIs and EnRichment

HyperGeometric Test for positions relative to Island

Description

HyperGeometric Test for positions relative to Island

Usage

getAllHypergeometricTest(
  significative,
  criteria,
  outputdir = ".",
  outputfile = NULL,
  plots = TRUE
)

Arguments

significative	numerical. Variable to take in to account as significative variable, could be FDR, p-value,...
criteria	dataframe with all relative positions to island values or chromatin status 15 or 18 Fetal Placenta
outputdir	string. Output path to store file with results, by default results are written in current dir
outputfile	string. File name to store results if no name is provided results are not written.
plots	boolean. If plot is TRUE, plot results

Value

Dataframe with hypergeometric test results for all criteria values

isglobal-brge/EASIER documentation built on Sept. 25, 2024, 10:50 p.m.