descriptives_CpGs: CpGs descriptive data

In isglobal-brge/EASIER: EwAS: quality control, meta-analysIs and EnRichment

CpGs descriptive data

Description

Get CpG descriptive data and optionally, writes a file with descriptive data from CpGs

Usage

descriptives_CpGs(
  cohort,
  columns,
  filename = NULL,
  nsamples = NULL,
  artype = "450K",
  before = TRUE
)

Arguments

cohort	Dataframe with CpGs data
columns	Integer vector with column position that we are interested in
filename	Optional, filename to write results, if NULL no results are writed in a file
nsamples	numeric, Optional, samples in cohort
before	bolean, Optional, if true, prints text "Before QC" , else, prints "After QC"

Value

list with descriptive values

• nCpGsNumber of CpGs in data

• BETADescriptive data for beta value

• SEDescriptive data for standard Error

• P_VALDescriptive data for p-value

isglobal-brge/EASIER documentation built on Feb. 12, 2024, 6:30 p.m.