API for isglobal-brge/EASIER
EwAS: quality control, meta-analysIs and EnRichment
| Global functions | |
|---|---|
| Chromatin_enrichment | Man page Source code |
| FP_15_E091 | Man page |
| FP_18_E091 | Man page |
| Hs.c2 | Man page |
| IR_Placenta | Man page |
| MSigDB_enrichment | Man page Source code |
| PMD_placenta | Man page |
| addCrom15Columns | Man page Source code |
| addDhsColumns | Man page Source code |
| addGroupColumns | Man page Source code |
| addPhantomSummary | Man page Source code |
| adjust_data | Man page Source code |
| annotate_CpGs | Source code |
| clean_NA_from_data | Man page Source code |
| create_GWAMA_files | Man page Source code |
| crom15 | Man page |
| descriptives_CpGs | Man page Source code |
| dhs | Man page |
| eQTM | Man page |
| exclude_CpGs | Man page Source code |
| filterCpGs | Man page Source code |
| filterLowRepresentedCpGsinCohort | Man page Source code |
| filter_450K | Man page |
| filter_EPIC | Man page |
| findOverlapValues | Man page Source code |
| generate_hapmap_file | Man page Source code |
| getAllChromStateOR | Man page Source code |
| getAllChromStateRegressions | Man page Source code |
| getAllFisherTest | Man page Source code |
| getAllHypergeometricTest | Man page Source code |
| getAllRelativeIslandOR | Man page Source code |
| getBinaryClassificationYesNo | Man page Source code |
| getChromStateOR | Man page Source code |
| getChromStateRegression | Man page Source code |
| getCritera | Source code |
| getEnrichGenomicRanges | Man page Source code |
| getEntrezIdfromSymbol | Man page Source code |
| getFisherTest | Man page Source code |
| getHyperHypo | Man page Source code |
| getHypergeometricTest | Man page Source code |
| getPMDGenomicRanges | Man page Source code |
| getRelativeIslanOR | Man page Source code |
| getUniqueGenes | Man page Source code |
| getUniqueValues | Man page Source code |
| get_GWAMA_results | Source code |
| get_annotation_unlisted_CpGs | Man page Source code |
| get_annotattions | Man page Source code |
| get_conditional_proportions | Source code Source code |
| get_consensusPdb_OverRepresentation | Man page Source code |
| get_descriptives_GenePosition | Man page Source code |
| get_descriptives_RelativetoIsland | Man page Source code |
| get_descriptives_postGWAMA | Man page Source code |
| get_lambda | Man page Source code |
| get_low_presence_CpGs | Man page Source code |
| get_proportions | Source code Source code |
| geteQTMEnrichment | Man page Source code |
| gg_colors | Source code |
| missMethyl_enrichment | Man page Source code |
| multmerge | Source code |
| plot_ChromStates | Man page Source code |
| plot_Depletion_Enrichment | Man page Source code |
| plot_ForestPlot | Man page Source code |
| plot_GenePosition | Man page Source code |
| plot_OR | Man page Source code |
| plot_ProportionHyperGeometrics | Man page Source code |
| plot_ProportionStatesFP | Man page Source code |
| plot_RelativetoIsland | Man page Source code |
| plot_Summary | Man page Source code |
| plot_TestEnrichDepleit_Collapsed | Man page Source code |
| plot_TestResults_Collapsed | Man page Source code |
| plot_TestResults_Collapsed_Positions | Man page Source code |
| plot_betas_boxplot | Man page Source code |
| plot_chromosomestate | Man page Source code |
| plot_distribution | Man page Source code |
| plot_missMethyl_Summary | Man page Source code |
| plot_precisionp | Man page Source code |
| plot_precissionp | Man page Source code |
| plot_venndiagram | Man page Source code |
| plot_volcano | Man page Source code |
| printTableEnrich | Man page Source code |
| rcpp_hello | Source code |
| remove_duplicate_CpGs | Man page Source code |
| restrict_CpGs_to_artype | Man page Source code |
| run_GWAMA_MetaAnalysis | Man page Source code |
| simplifyDuplicates | Man page Source code |
| summary_HyperGeometrics_Table | Man page Source code |
| summary_States_FP_Table | Man page Source code |
| test_duplicate_CpGs | Man page Source code |
| write_QCData | Man page Source code |
| write_enrichment_to_file | Source code |
