run_GWAMA_MetaAnalysis: Run GWAMA meta-analysis

In isglobal-brge/EASIER: EwAS: quality control, meta-analysIs and EnRichment

Run GWAMA meta-analysis

Description

Runs GWAMA for fixed and random effects, results with fixed events are stored in file wit _Fixed suffix and meta-analysis results with random effects are in a sufixed file _Random.

Usage

run_GWAMA_MetaAnalysis(
  inputfolder,
  outputfolder,
  outputfilename,
  gwama.dir,
  hapmapfile
)

Arguments

inputfolder	string. Path with input files for GWAMA.
outputfolder	string. Path to store gwama meta-analisis results
outputfilename	string. File name to write gwama meta-analisis results, will end with _Fixed or with _Random.
gwama.dir	string. Route to GWAMA binary
hapmapfile	string. complete or relative route to hapmap file

Value

Route to gwama result files

isglobal-brge/EASIER documentation built on Sept. 25, 2024, 10:50 p.m.