summary_HyperGeometrics_Table: Summarized States Fetal Placenta for significant, hyper and...

In isglobal-brge/EASIER: EwAS: quality control, meta-analysIs and EnRichment

Summarized States Fetal Placenta for significant, hyper and hypo in a data frame

Description

Summarized States Fetal Placenta for significant, hyper and hypo in a data frame

Usage

summary_HyperGeometrics_Table(
  significative,
  significativehyper,
  significativehypo,
  criteria,
  resformat = "long",
  outputdir = ".",
  outputfile = NULL,
  plot = TRUE
)

Arguments

significative	boolean vector with significant = 'yes' in significant values for BN, FDR, p-value ....
significativehyper	boolean vector with significanthyper='yes' if CpG is significant for BN, FDR, p-value ... and CpG is hyper-methylated
significativehypo	boolean vector with significanthypo='yes' if CpG is significant for BN, FDR, p-value ... and CpG is hyper-methylated
criteria	string vector with values to take in to account to perform summarize, for example Chromatine States 15 Fetal Placenta
resformat	string, if 'long' returns a extended table to use with plot else returns a compacted table
outputdir	string. Output path to store file with results, by default results are written in current dir
outputfile	string. File name to store results if no name is provided results are not written.The suffix "_States_FP" and the prefix "Porp" are added to file name provided.
plot	boolean. If plot is TRUE, plot results

Value

Dataframe with summarized data (extended version)

isglobal-brge/EASIER documentation built on Sept. 25, 2024, 10:50 p.m.