plot_ForestPlot: Forest plot

In isglobal-brge/EASIER: EwAS: quality control, meta-analysIs and EnRichment

Forest plot

Description

Forest plot

Usage

plot_ForestPlot(
  datas,
  files_meta,
  islowCpg,
  gwana_dir,
  metaname,
  files,
  outputgwama,
  nsignificatives = 30,
  criteria = "p.value",
  selectedCpGs = NULL
)

Arguments

datas	complete data obtained from meta-analysis after QC without annotations
files_meta	string vector with files used in the meta-analysis
islowCpg	string string indicating if the execution has been carried out with all the CpGs or with the filtered CpGs, possible values : 'Normal', 'lowcpgs'
gwana_dir	string with gwama input data path
metaname	string with meta-analysis name
files	string vector with files used in QC because we need data from this files to perform ForestPlots
outputgwama	string with gwama output path
nsignificatives	number, lowest p-values to show in forestplot, by default, lowestp=30
criteria	character string with criteria to be used to select the first significative CpGs, by default the criteria is p.value (without any adjustment). Possible values are "p.value", "FDR" or "Bonferroni", in that case function plots all significative CpGs.
selectedCpGs	character vector with the names of the CpGs to be plotted

Value

distribution plot

isglobal-brge/EASIER documentation built on Sept. 25, 2024, 10:50 p.m.