plot_venndiagram: Venn diagrams plots

In isglobal-brge/EASIER: EwAS: quality control, meta-analysIs and EnRichment

Venn diagrams plots

Description

Plot Venn diagrams

Usage

plot_venndiagram(
  venndata,
  qcpath = ".",
  plotpath = ".",
  pattern = "*_QCData.txt",
  bn = NULL,
  fdr = NULL,
  threshold = 0.05
)

Arguments

venndata	prefixes used as a file name to store QC data
qcpath	optional, path to store Venn Diagrams, by default current path
pattern	optional, pattern with data to be used in Venn diagrams, by default '*_QCData.txt'
bn,	optional, column name with bonferroni adjusted values, if NULL, no venndiagram plot for Bonferroni
fdr,	column name with bonferroni adjusted values, if NULL, no venndiagram plot for FDR
threshold,	numeric, optiona, by default threshlold = 0.05, we take in to account all CpGs with p-value lower than this threshold
path	optional, path where QC data is stored, by default current path

Value

Venn diagrams

isglobal-brge/EASIER documentation built on Feb. 12, 2024, 6:30 p.m.