UCSC_regulation: UCSC annotation
In isglobal-brge/EpiMutations: Robust outlier identification for DNA methylation data
UCSC_regulation R Documentation
UCSC annotation
Description
UCSC annotations for CpG Islands, H3K27Ac and H3K4Me3
for a given genome assembly and genomic coordinates.
Usage
UCSC_regulation(genome, chr, from, to)
Arguments
genome
genome asambly. Can be set as:
'hg38', 'hg19' and 'hg18'.
chr
a character string containing
the sequence names to be analysed.
from, to
scalar, specifying the range of genomic coordinates.
Note that from cannot be larger than to.
Value
UCSC_regulation returns
a list containing CpG Islands, H3K27Ac and H3K4Me3 tacks.
isglobal-brge/EpiMutations documentation built on April 20, 2024, 9:05 a.m.
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| UCSC_regulation | R Documentation |
UCSC annotation
Description
UCSC annotations for CpG Islands, H3K27Ac and H3K4Me3 for a given genome assembly and genomic coordinates.
Usage
UCSC_regulation(genome, chr, from, to)
Arguments
genome |
genome asambly. Can be set as:
|
chr |
a character string containing the sequence names to be analysed. |
from, to |
scalar, specifying the range of genomic coordinates.
Note that |
Value
UCSC_regulation returns
a list containing CpG Islands, H3K27Ac and H3K4Me3 tacks.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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