betas_from_bump: Obtains bumps beta values
In isglobal-brge/EpiMutations: Robust outlier identification for DNA methylation data
View source: R/betas_from_bump.R
betas_from_bump R Documentation
Obtains bumps beta values
Description
The function obtains beta values
corresponding to the CpGs into DMRs.
Usage
betas_from_bump(bump, fd, betas)
Arguments
bump
the result from bumphunter.
fd
a data frame containing the genomic ranges for each CpGs.
betas
a matrix containing the beta
values for all CpGs in each sample.
Value
The function returns a data
frame containing the beta values
for each sample and CpG into DMR.
isglobal-brge/EpiMutations documentation built on April 20, 2024, 9:05 a.m.
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View source: R/betas_from_bump.R
| betas_from_bump | R Documentation |
Obtains bumps beta values
Description
The function obtains beta values corresponding to the CpGs into DMRs.
Usage
betas_from_bump(bump, fd, betas)
Arguments
bump |
the result from bumphunter. |
fd |
a data frame containing the genomic ranges for each CpGs. |
betas |
a matrix containing the beta values for all CpGs in each sample. |
Value
The function returns a data frame containing the beta values for each sample and CpG into DMR.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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