res_mlm: Creates a data frame containing the results obtained from MLM

In isglobal-brge/EpiMutations: Robust outlier identification for DNA methylation data

Creates a data frame containing the results obtained from MLM

Description

Creates a data frame containing the genomic regions, statistics and direction for the DMRs.

Usage

res_mlm(bump, sts)

Arguments

bump	a DMR obtained from bumphunter (i.e. a row from bumphunter method result).
sts	the F statistic, R2 test statistic and Pillai obtained as a result of epi_mlm function.

Value

The function returns a data frame containing the following information for each DMR:

• genomic ranges

• DMR base pairs

• number and name of CpGs in DMR

• statistics:

  • Outlier score

  • Outlier significance

  • Outlier direction

• Sample name

For more information about the output see epimutations.

isglobal-brge/EpiMutations documentation built on April 20, 2024, 9:05 a.m.