add_ensemble_regulatory: Add ENSEMBL regulatory regions to epimutations

In isglobal-brge/EpiMutations: Robust outlier identification for DNA methylation data

Add ENSEMBL regulatory regions to epimutations

Description

Add ENSEMBL regulatory regions to epimutations

Usage

add_ensemble_regulatory(epimutations, build = "37")

Arguments

epimutations	a data frame object containing the result from epimutations or epimutations_one_leave_out functions.
build	the build used to define epimutations coordinates. By default, it is '37', corresponding to Illumina annotation.

Value

The function returns a data frame object containing the results of epimutations or epimutations_one_leave_out with some additional variables describing regulatory elements from ENSEMBL.

Note that a single epimutation might overlap with more than one regulatory region. In that case, the different regulatory regions are separated by ⁠///⁠.

• ensembl_reg_idRegion identifier from ENSEMBL

• ensembl_reg_coordinatesCoordinates for the ENSEMBL regulatory regions

• ensembl_reg_typeType of regulatory region

• ensembl_reg_tissuesActivity of the regulatory region per tissue. The different activation states are separated by /

isglobal-brge/EpiMutations documentation built on April 20, 2024, 9:05 a.m.