annotate_epimutations: Annotate the results of epimutations or...

In isglobal-brge/EpiMutations: Robust outlier identification for DNA methylation data

Annotate the results of epimutations or epimutations_one_leave_out functions

Description

Information about close genes and regulatory elements for epimutations.

Usage

annotate_epimutations(
  epi_results,
  db = "IlluminaHumanMethylationEPICanno.ilm10b2.hg19",
  build = "37",
  ...
)

Arguments

epi_results	a data frame object containing the output from epimutations or epimutations_one_leave_out functions.
db	a character string containing the Illumina annotation package used to annotate the CpGs.
build	a character string containing the genomic build where the epimutations are mapped. The default is GRCh37 (build = "37"). To use GRCh38 set built to NULL.
...	Further arguments passed to annotate_cpg.

Value

The function returns the input object epi_results with additional columns containing the information about the genes or overlapping regulatory features.

See annotate_cpg and add_ensemble_regulatory for an in-depth description of these variables.

Examples

data(res.epi.manova)
#Annotate the epimutations

#anno_results <- annotate_epimutations(res.epi.manova)

isglobal-brge/EpiMutations documentation built on April 20, 2024, 9:05 a.m.