README.md

In jacobheng/cellwrangler: Supplemental toolkit for single-cell RNAseq analysis

cellwrangler

A supplementary toolkit for analyzing single-cell data implemented in R

cellwrangler is an R package containing supplementary functions for analyzing single-cell RNA-seq data.

These functions streamline scRNA-seq analysis and also integrate functions from other R packages including monocle, emptyDrops and CoGAPS.

cellwranger was built in R version 3.5.2.

Installation

To install cellwrangler:

install.packages("devtools")
devtools::install_github("jacobheng/cellwrangler")

Citation

If cellwrangler has helped you in your work, please cite:

Heng JS, Rattner A, Stein-O’Brien GL, Winer BL, Jones BW, Vernon HJ, Goff LA, Nathans J. Hypoxia tolerance in the Norrin-deficient retina and the chronically hypoxic brain studied at single-cell resolution. Proc Natl Acad Sci U S A. 2019 Apr 15. pii: 201821122. doi: 10.1073/pnas.1821122116 [link to paper]

jacobheng/cellwrangler documentation built on Aug. 12, 2019, 6:49 a.m.