API for jacobheng/cellwrangler
Supplemental toolkit for single-cell RNAseq analysis

Global functions
CellType_genes_jitter Man page Source code
CreateSeuratObjectList Man page Source code
annotate_bcv Man page Source code
calculate_mt_exprs Man page Source code
createMultiSoupChannel Man page Source code
createSoupChannel Man page Source code
create_monocle_cds Man page Source code
dim_coord_barcode Man page Source code
emptySoup Man page Source code
exprs_threshold Man page Source code
findGeneID Man page Source code
findGeneName Man page Source code
findRows Man page Source code
find_CCA_genes Man page Source code
find_highbcv_genes Man page Source code
find_sample_dispersed_genes Man page Source code
find_sample_expressed_genes Man page Source code
fit_cds_vglm Man page Source code
gene_barplot Man page Source code
gene_jitterplot Man page Source code
get_kegg_database Man page Source code
get_kegg_pathway_genes Man page Source code
get_patternMarkerNames Man page Source code
load_10X_matrix Man page Source code
load_CoGAPS_res Man page Source code
log_normalize_cds Man page Source code
make_rnk Man page Source code
merge_by_rownames Man page Source code
merge_df_list Man page Source code
plot_CoGAPS_ChiSq Man page Source code
plot_bcv Man page Source code
plot_drops_diagnostics Man page Source code
plot_gene_exprs Man page Source code
plot_groups Man page Source code
plot_matrix_dendrogram Man page Source code
plot_matrix_heatmap Man page Source code
plot_mean_exprs_heatmap Man page Source code
plot_pathway_dendrogram Man page Source code
plot_pathway_heatmap Man page Source code
plot_patternSet_dim Man page Source code
plot_pattern_cor_dendrogram Man page Source code
plot_pattern_cor_heatmap Man page Source code
plot_pattern_dim Man page Source code
plot_pheatmap Man page Source code
plot_sparse_pca_var Man page Source code
rowSD Man page Source code
rowSE Man page Source code
sparse_pca Source code
sparse_pca_biplot Man page Source code
spectral_tsne Man page Source code
spectral_umap Man page Source code
split_aggr_mtx Man page Source code
summarize_cds_exprs Man page Source code
testDrops Man page Source code
jacobheng/cellwrangler documentation built on March 22, 2019, 2:39 a.m.