API for jacobheng/cellwrangler
Supplemental toolkit for single-cell RNAseq analysis
| Global functions | |
|---|---|
| CellType_genes_jitter | Man page Source code |
| CreateSeuratObjectList | Man page Source code |
| annotate_bcv | Man page Source code |
| calculate_mt_exprs | Man page Source code |
| createMultiSoupChannel | Man page Source code |
| createSoupChannel | Man page |
| create_monocle_cds | Man page Source code |
| dim_coord_barcode | Man page Source code |
| emptySoup | Man page |
| exprs_threshold | Man page Source code |
| findGeneID | Man page Source code |
| findGeneName | Man page Source code |
| findRows | Man page Source code |
| find_CCA_genes | Man page Source code |
| find_highbcv_genes | Man page Source code |
| find_sample_dispersed_genes | Man page Source code |
| find_sample_expressed_genes | Man page Source code |
| fit_cds_vglm | Man page Source code |
| gene_barplot | Man page |
| gene_jitterplot | Man page |
| get_expressed_genes | Man page Source code |
| get_kegg_database | Man page Source code |
| get_kegg_pathway_genes | Man page Source code |
| get_mean_condition_counts | Man page Source code |
| get_patternMarkerNames | Man page Source code |
| load_10X_matrix | Man page Source code |
| load_CoGAPS_res | Man page Source code |
| log_normalize_cds | Man page Source code |
| make_rnk | Man page Source code |
| mean_scale_cds | Man page |
| merge_by_rownames | Man page Source code |
| merge_df_list | Man page Source code |
| monocle_UMAP | Man page Source code |
| monocle_fitModel | Man page Source code |
| monocle_sparse_prcomp_irlba | Man page |
| order_marker_matrix | Man page Source code |
| plot_CoGAPS_ChiSq | Man page Source code |
| plot_CoGAPS_patternSet_dim | Man page Source code |
| plot_CoGAPS_pattern_cor_dendrogram | Man page Source code |
| plot_CoGAPS_pattern_cor_heatmap | Man page Source code |
| plot_CoGAPS_pattern_dim | Man page Source code |
| plot_bcv | Man page Source code |
| plot_drops_diagnostics | Man page Source code |
| plot_gene_exprs | Man page |
| plot_groups | Man page |
| plot_marker_heatmap | Man page Source code |
| plot_matrix_dendrogram | Man page Source code |
| plot_matrix_heatmap | Man page Source code |
| plot_mean_exprs_heatmap | Man page |
| plot_pathway_dendrogram | Man page Source code |
| plot_pathway_heatmap | Man page Source code |
| plot_pheatmap | Man page Source code |
| plot_sparse_pca_var | Man page Source code |
| rowSD | Man page Source code |
| rowSE | Man page Source code |
| sparse_pca | Man page Source code |
| sparse_pca_biplot | Man page Source code |
| spectral_tsne | Man page Source code |
| spectral_umap | Man page Source code |
| split_aggr_mtx | Man page Source code |
| subset_cds | Man page Source code |
| summarize_cds_exprs | Man page Source code |
| testDrops | Man page Source code |
