get_patternMarkerNames: Get pattern markers as gene names for a set of CoGAPS results
In jacobheng/cellwrangler: Supplemental toolkit for single-cell RNAseq analysis
Description
Usage
Arguments
Value
Examples
View source: R/get_patternMarkerNames.R
Description
get_patternMarkerNames is a wrapper function around the CoGAPS::patternMarkers function for
retrieving pattern markers as gene names for a set of CoGAPS results derived from a monocle CellDataSet object.
Usage
1
get_patternMarkerNames(CoGAPS_res, cds, threshold = "all", lp = NA)
Arguments
CoGAPS_res
a CoGAPS result object.
cds
a CellDataSet object e.g. used in the monocle package
Value
a CoGAPS patternMarkers object
Examples
1
patternMarkers <- get_patternMarkerNames(myCoGAPSres, cds=dat)
jacobheng/cellwrangler documentation built on Aug. 12, 2019, 6:49 a.m.
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Description Usage Arguments Value Examples
View source: R/get_patternMarkerNames.R
Description
get_patternMarkerNames is a wrapper function around the CoGAPS::patternMarkers function for retrieving pattern markers as gene names for a set of CoGAPS results derived from a monocle CellDataSet object.
Usage
1 | get_patternMarkerNames(CoGAPS_res, cds, threshold = "all", lp = NA)
|
Arguments
CoGAPS_res |
a CoGAPS result object. |
cds |
a CellDataSet object e.g. used in the monocle package |
Value
a CoGAPS patternMarkers object
Examples
1 | patternMarkers <- get_patternMarkerNames(myCoGAPSres, cds=dat)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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