plot_CoGAPS_patternSet_dim: Plot a set of CoGAPS patterns on a dimensionality reduction...
In jacobheng/cellwrangler: Supplemental toolkit for single-cell RNAseq analysis

plot_CoGAPS_patternSet_dim() plots Pmeans of a CoGAPS pattern set on a dimensonality reduction plots.

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plot_CoGAPS_patternSet_dim(CoGAPS_res_set, Pattern_set, annotation,
  dim_reduction, color_scale = c("slategray1", "red"),
  facet_wrap_by = NULL)

`CoGAPS_res_set`	a CoGAPS result set. If set to NULL, a Pmeans matrix may be supplied directly as input for the Pattern_set parameter.
`Pattern_set`	a string specifying the name of a pattern set (e.g. "nP20") in a CoGAPS_res_set. Alternatively, if CoGAPS_res_set is set to NULL, a Pmeans matrix may be supplied directly.
`annotation`	an annotation dataframe. Must contain columns with column names corresponding to values in the group_vector.
`dim_reduction`	a dataframe specifying the coordinates of a dimensionality reduction method (e.g. t-SNE, UMAP etc.). Each column should specify one dimension. Rownames should correspond to the rownames of the annotation object. Colnames will be used as axis labels.
`facet_wrap_by`	a string specifying variable for facet_wrap; defaults to NULL.