findGeneName: Find gene names given Ensembl gene IDs

In jacobheng/cellwrangler: Supplemental toolkit for single-cell RNAseq analysis

Description

Using Ensembl gene IDs as input, findGeneName() returns the corresponding gene names in the fData of the specified CellDataSet object.

Usage

findGeneName(gene_IDs, cds)

Arguments

gene_IDs	a vector of Ensembl gene IDs e.g ENSMUSG00000035783
cds	a CellDataSet object e.g. used in the monocle package

Value

string(s)

Examples

findGeneName(c("ENSMUSG00000035783","ENSMUSG00000031871","ENSMUSG00000036446"), myCDS)

jacobheng/cellwrangler documentation built on Aug. 12, 2019, 6:49 a.m.