Description Usage Arguments Value Examples
make_rnk() makes rank lists for pre-ranked geneset enrichment analysis.
| 1 2 | 
| celltype | CellType to create rank lists for. | 
| rank_df | a dataframe with the pre-requisite rank statistics | 
| gene_name | column in rank_df containing gene names. | 
| rank_stat | column in rank_df containing statistic to rank genes by. | 
| decreasing | logical; whether to rank genes by decreasing value of rank_stat. | 
| write_rnk | logical; whether to write .rnk files for GSEA | 
| output_dir | name of directory to write .rnk files to; if directory does not exist, it will be created | 
| output_name | prefix for .rnk file names; .rnk files will be named "output_name_celltype.rnk" | 
| group_column | column name of column in annotation object with values corresponding to those in group_vector to use for computing logical columns. Defaults to NULL | 
a list
| 1 | make_rnk(Rods, rank_df, "Gene_symbol", "Rank stat", decreasing =T, write_rnk=F)
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