exprs_threshold: Determine if cells are above an expression threshold of a...
In jacobheng/cellwrangler: Supplemental toolkit for single-cell RNAseq analysis
Description
Usage
Arguments
Value
Examples
View source: R/exprs_threshold.R
Description
dim_coord_barcode() returns the rownames of cells based on the coordiates of a dimensionality reduction
projection (e.g. t-SNE, UMAP).
Usage
1
exprs_threshold(cds, gene_name, threshold_value)
Arguments
cds
a monocle CellDataSet object.
gene_name
official gene name e.g. "Actb".
threshold_value
numeric; threshold of expression of gene.
Value
A boolean vector
Examples
1
exprs_threshold(dat, "Actb", 1)
jacobheng/cellwrangler documentation built on Aug. 12, 2019, 6:49 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
View source: R/exprs_threshold.R
Description
dim_coord_barcode() returns the rownames of cells based on the coordiates of a dimensionality reduction projection (e.g. t-SNE, UMAP).
Usage
1 | exprs_threshold(cds, gene_name, threshold_value)
|
Arguments
cds |
a monocle CellDataSet object. |
gene_name |
official gene name e.g. "Actb". |
threshold_value |
numeric; threshold of expression of gene. |
Value
A boolean vector
Examples
1 | exprs_threshold(dat, "Actb", 1)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.